Terminologies: ExperimentalApproach library

@id:: https://openminds.ebrains.eu/instances/experimentalApproach/chemogenetics
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on using genetically encoded chemically sensitive proteins in combination with a specific agonist delivered systemically in order to manipulate the behavior of populations of cells.
name:: chemogenetics

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clinicalResearch

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/clinicalResearch
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on medical observation, treatment, or testing of patients.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0739401
name:: clinical research
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/Clinical

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computationalModeling

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/computationalModeling
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on creating or characterizing computational models or simulations of experimentally observed phenomena.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0739414
name:: computational modeling
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/ComputationalModelling

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developmentalBiology

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/developmentalBiology
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on life cycle, development, or developmental history of an organism.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0739412
name:: developmental biology
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/Developmental

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ecology

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/ecology
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on interrelationship of organisms and their environments, including causes and consequences.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0739389
name:: ecology
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/Ecology

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electrophysiology

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/electrophysiology
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on electrical phenomena associated with living systems, most notably the nervous system, cardiac system, and musculoskeletal system.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0741202
name:: electrophysiology
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/Electrophysiology

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epidemiology

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/epidemiology
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on incidence, distribution, and possible control of diseases and other factors relating to health.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0739400
name:: epidemiology
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/Epidemiology

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epigenomics

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/epigenomics
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on processes that modulate transcription but that do not directly alter the primary sequences of an organism’s DNA.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0741207
name:: epigenomics
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/Epigenomics

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ethology

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/ethology
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on natural unmanipulated human or animal behavior and social organization from a biological, life history, and often evolutionary perspective.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0739388
name:: ethology
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/Ethology

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evolutionaryBiology

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/evolutionaryBiology
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on heritable characteristics of biological populations and their variation through the modification of developmental process to produce new forms and species.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0739392
name:: evolutionary biology
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/Evolution

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expression

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/expression
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on driving or detecting expression of genes in cells or tissues.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0739397
name:: expression
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/Expression

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expressionCharacterization

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/expressionCharacterization
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on the cellular, anatomical, or morphological distribution of gene expression.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0739409
name:: expression characterization
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/ExpressionCharachterization

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genetics

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/genetics
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Experimental approach that measures or manipulates some aspect of the genetic material of an organism.
name:: genetics

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genomics

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/genomics
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on structure, function, evolution, and mapping of genomes, the entiretiy of the genetic material of a single organism.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0741204
name:: genomics
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/Genomics

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histology

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/histology
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on structure of biological tissue.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0739399
name:: histology
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/Histology

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informatics

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/informatics
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on collection, classification, storage, retrieval, analysis, visualization, and dissemination of recorded knowledge in computational systems.
name:: informatics

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metabolomics

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/metabolomics
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on chemical processes involving metabolites, the small molecule substrates, intermediates and products of cell metabolism.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0741203
name:: metabolomics
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/Metabolomics

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microscopy

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/microscopy
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on using differential contrast of microscopic structures to form an image.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0739404
name:: microscopy
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/Microscopy

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morphology

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/morphology
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on the shape and structure of living organisms or their parts.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0739403
name:: morphology
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/Morphology

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multimodalResearch

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/multimodalResearch
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach that employs multiple experimental approaches in significant ways.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0739395
name:: multimodal research
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/Multimodal

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multiomics

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/multiomics
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach that employs multiple omics approaches in significant ways.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0739407
name:: multiomics
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/Multiomics

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neuralConnectivity

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/neuralConnectivity
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on functional or anatomical connections between single neurons or populations of neurons in defined anatomical regions.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0739393
name:: neural connectivity
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/Connectivity

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neuroimaging

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/neuroimaging
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on the non-invasive direct or indirect imaging of the structure, function, or pharmacology of the nervous system.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0741206
name:: neuroimaging
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/Neuroimaging

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omics

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/omics
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on characterization and quantification of biological molecules that give rise to the structure, function, and dynamics of organisms or their parts.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0739405
name:: omics
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/Omics

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optogenetics

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/optogenetics
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on using genetically encoded light-sensitive proteins in combination with targeted delivery of light in order to manipulate the behavior of populations of cells.
name:: optogenetics

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pharmacology

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/pharmacology
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: ‘Pharmacology’ is an experimental approach in which the composition, properties, functions, sources, synthesis and design of drugs (any artificial, natural, or endogenous molecule) and their biochemical or physiological effect (normal or abnormal) on a cell, tissue, organ, or organism are studied. [adapted from [wikipedia](https://en.wikipedia.org/wiki/Pharmacology)]
interlexIdentifier:: http://uri.interlex.org/base/ilx_0108784
name:: pharmacology
preferredOntologyIdentifier:: http://edamontology.org/topic_0202

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physiology

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/physiology
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on normal functions of living organisms and their parts.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0739410
name:: physiology
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/Physiology

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proteomics

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/proteomics
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on the composition, structure, and activity of an entire set of proteins in organisms or their parts.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0741205
name:: proteomics
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/Proteomics

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radiology

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/radiology
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on using non-invasive techniques that use intrinsic or induced contrast to form images. Also covers purely clinical domains such as nuclear medicine.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0739390
name:: radiology
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/Radiology

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spatialTranscriptomics

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/spatialTranscriptomics
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on mapping the spatial location of gene activity in biological tissue.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0739396
name:: spatial transcriptomics
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/SpatialTranscriptomics

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transcriptomics

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@id:: https://openminds.ebrains.eu/instances/experimentalApproach/transcriptomics
@type:: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach
definition:: Any experimental approach focused on the transcriptome (all RNA transcripts) of one or more cells, tissues, or organisms.
interlexIdentifier:: http://uri.interlex.org/base/ilx_0739406
name:: transcriptomics
preferredOntologyIdentifier:: http://uri.interlex.org/tgbugs/uris/readable/modality/Transcriptomics

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