CommonCoordinateSpaces library
Related schema specification: CommonCoordinateSpace
AMB-CCF
metadata sheet
- @id:
https://openminds.ebrains.eu/instances/commonCoordinateSpace/AMB-CCF
- @type:
- abbreviation:
AMB CCF
- description:
The ‘Allen Mouse Brain Common Coordinate Framework’ is a 3D reconstruction of an averaged adult mouse brain.
- fullName:
Allen Mouse Brain Common Coordinate Framework
- hasVersion:
- homepage:
- shortName:
Allen Mouse Brain CCF
- usedSpecies:
BigBrain
metadata sheet
- @id:
https://openminds.ebrains.eu/instances/commonCoordinateSpace/BigBrain
- @type:
- abbreviation:
BigBrain
- description:
The ‘BigBrain Whole-Brain Model’ is a 3D reconstruction of a human brain in extremely high resolution.
- fullName:
BigBrain Whole-Brain Model
- hasVersion:
- homepage:
- shortName:
BigBrain Model
- usedSpecies:
MEBRAINStemplate
metadata sheet
- @id:
https://openminds.ebrains.eu/instances/commonCoordinateSpace/MEBRAINStemplate
- @type:
- abbreviation:
MEBRAINStemplate
- description:
The ‘MEBRAINS population-based monkey brain template’ is a multi-subject based, multi-modal, volume and surface brain template for macaque monkeys.
- fullName:
MEBRAINS population-based monkey brain template
- hasVersion:
- shortName:
MEBRAINS brain template
- usedSpecies:
MNI-Colin27
metadata sheet
- @id:
https://openminds.ebrains.eu/instances/commonCoordinateSpace/MNI-Colin27
- @type:
- abbreviation:
MNI-Colin27
- description:
The ‘MNI Colin 27 Average Brain Stereotaxic Registration Model’ is a stereotaxic average of 27 T1-weighted MRI scans of the same individual. It was created at the Montreal Neurological Institute (MNI) in a two step process: (1) each of the 27 T1-weighted scans were registered to stereotaxic space using MRITOTAL (an automated volumetric registration procedure) and resampled onto a 1mm grid. All 27 scans were averaged together to create an initial average. (2) The initial average volume was used as a target for a second phase of registration where each original T1-weighted MRI was re-registered in stereotaxic space. This two-step procedure has the advantage of removing the small variance in intra-subject mapping in stereotaxic space associated with the use of a multi-subject average resulting in an average brain stereotaxic registration model with high signal-to-noise ratio and structure definition.
- fullName:
MNI Colin27 Average Brain Stereotaxic Registration Model
- hasVersion:
- homepage:
https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases
- howToCite:
Holmes CJ, Hoge R, Collins L, Woods R, Toga AW, and Evans AC; ‘Enhancement of MR images using registration for signal averaging.’; J Comput Assist Tomogr; 1998 Mar-Apr; 22(2):324–33. [doi: 10.1097/00004728-199803000-00032](http://dx.doi.org/10.1097/00004728-199803000-00032) Aubert-Broche B, Evans AC, and Collins DL; ‘A new improved version of the realistic digital brain phantom’; NeuroImage; 2006 Aug;32(1):138–45. [doi: 10.1016/j.neuroimage.2006.03.052](https://doi.org/10.1016/j.neuroimage.2006.03.052)
- shortName:
MNI Colin27 Average Brain
- usedSpecies:
MNI-ICBM152
metadata sheet
- @id:
https://openminds.ebrains.eu/instances/commonCoordinateSpace/MNI-ICBM152
- @type:
- abbreviation:
ICBM152
- description:
The ‘MNI ICBM152 Average Brain Stereotaxic Registration Model’ is an average of T1-weighted magnetic resonance imaging (MRI) scans from 152 normative young adults.
- fullName:
MNI ICBM152 Average Brain Stereotaxic Registration Model
- hasVersion:
- homepage:
https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases
- shortName:
MNI ICBM152
- usedSpecies:
WHSSD
metadata sheet
- @id:
https://openminds.ebrains.eu/instances/commonCoordinateSpace/WHSSD
- @type:
- abbreviation:
WHSSD
- description:
The ‘Waxholm Space of the Sprague Dawley Rat Brain (coordinate space)’ employs a continuous three- dimensional Cartesian coordinate system, with its origin set at the decussation of the anterior commissure.
- fullName:
Waxholm Space of the Sprague Dawley Rat Brain (coordinate space)
- hasVersion:
- homepage:
- shortName:
WHS of the SD Rat Brain
- usedSpecies:
fsLR
metadata sheet
- @id:
https://openminds.ebrains.eu/instances/commonCoordinateSpace/fsLR
- @type:
- abbreviation:
fsLR
- description:
The ‘Unbiased FsAverage Left–Right Hybrid Surface Space’ (fsLR) brings the left and right fsaverage surfaces into geographic correspondence using Landmark-SBR ([Van Essen et al. 2011](https://doi.org/10.1093/cercor/bhr291)).
- fullName:
Unbiased FsAverage Left–Right Hybrid Surface Space
- hasVersion:
- shortName:
fsLR Surface Space
- usedSpecies:
fsaverage
metadata sheet
- @id:
https://openminds.ebrains.eu/instances/commonCoordinateSpace/fsaverage
- @type:
- abbreviation:
fsaverage
- fullName:
FsAverage Surface Space
- hasVersion:
- shortName:
FsAverage Surface Space
- usedSpecies: