Strain

Semantic name:

https://openminds.ebrains.eu/core/Strain



Properties

Required:

geneticStrainType, name, species

Optional:

alternateIdentifier, backgroundStrain, breedingType, description, digitalIdentifier, diseaseModel, laboratoryCode, ontologyIdentifier, phenotype, stockNumber, synonym


alternateIdentifier

schema_specifications

semantic name:

https://openminds.ebrains.eu/vocab/alternateIdentifier

value type:
string array (1-N)
formatting: text/plain; singleline
instructions:

Enter all identifiers for this strain, excluding its ontological identifiers or RRID (e.g., identifiers from the Mouse Genome Informatics (MGI) database or Rat Genome Database (RGD)).

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backgroundStrain

schema_specifications

semantic name:

https://openminds.ebrains.eu/vocab/backgroundStrain

value type:
linked object array (1-2) of type
instructions:

Add the background strain that explains the majority of the genetic background and/or causes the majority of the prominent traits. If two strains contributed equally, state both.

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breedingType

schema_specifications

semantic name:

https://openminds.ebrains.eu/vocab/breedingType

value type:
linked object of type
instructions:

Add the breeding type for this strain.

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description

Longer statement or account giving the characteristics of someone or something.

schema_specifications

semantic name:

https://openminds.ebrains.eu/vocab/description

value type:
string
formatting: text/markdown; multiline
instructions:

Enter a short text describing this strain.

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digitalIdentifier

Digital handle to identify objects or legal persons.

schema_specifications

semantic name:

https://openminds.ebrains.eu/vocab/digitalIdentifier

value type:
linked object of type
instructions:

Add the ‘Research Resource Identifier’ (RRID) of this strain.

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diseaseModel

schema_specifications

semantic name:

https://openminds.ebrains.eu/vocab/diseaseModel

value type:
linked object array (1-N) of type
instructions:

Add all (human) diseases and/or conditions that this strain is a model for.

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geneticStrainType

schema_specifications

semantic name:

https://openminds.ebrains.eu/vocab/geneticStrainType

value type:
linked object of type
instructions:

Add the genetic background type of this strain.

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laboratoryCode

schema_specifications

semantic name:

https://openminds.ebrains.eu/vocab/laboratoryCode

value type:
string
formatting: text/plain; singleline
instructions:

Enter the laboratory code assigned by the Institute of Laboratory Animal Research (ILAR) for the investigator or organization that has created this strain following the defined pattern (e.g., Aaa).

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name

Word or phrase that constitutes the distinctive designation of a being or thing.

schema_specifications

semantic name:

https://openminds.ebrains.eu/vocab/name

value type:
string
formatting: text/plain; singleline
instructions:

Enter the name of this strain.

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ontologyIdentifier

Term or code used to identify something or someone registered within a particular ontology.

schema_specifications

semantic name:

https://openminds.ebrains.eu/vocab/ontologyIdentifier

value type:
string array (1-N)
formatting: text/plain; singleline
instructions:

Enter the internationalized resource identifiers (IRIs) to the related ontological terms matching this strain.

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phenotype

Physical expression of one or more genes of an organism.

schema_specifications

semantic name:

https://openminds.ebrains.eu/vocab/phenotype

value type:
string
formatting: text/plain; singleline
instructions:

Enter a short description for the phenotype of this strain.

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species

Category of biological classification comprising related organisms or populations potentially capable of interbreeding, and being designated by a binomial that consists of the name of a genus followed by a Latin or latinized uncapitalized noun or adjective.

schema_specifications

semantic name:

https://openminds.ebrains.eu/vocab/species

value type:
linked object of type
instructions:

Add the species of this strain.

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stockNumber

schema_specifications

semantic name:

https://openminds.ebrains.eu/vocab/stockNumber

value type:
embedded object of type
instructions:

Add the stock number from the vendor the strain was supplied from/is in stock at.

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synonym

Words or expressions used in the same language that have the same or nearly the same meaning in some or all senses.

schema_specifications

semantic name:

https://openminds.ebrains.eu/vocab/synonym

value type:
string array (1-N)
formatting: text/plain; singleline
instructions:

Enter any synonyms (including abbreviations) of this strain.

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