Allen Mouse Brain CCF

Related schema specification: CommonCoordinateSpace



version v3-RAS

@id:

https://openminds.ebrains.eu/instances/commonCoordinateSpaceVersion/AMB-CCF_v3-RAS

@type:

https://openminds.ebrains.eu/sands/CommonCoordinateSpaceVersion

abbreviation:

AMB CCF

accessibility:

free access

anatomicalAxesOrientation:

RAS

fullName:

Allen Mouse Brain Common Coordinate Framework

homepage:

https://portal.brain-map.org/

howToCite:

Wang Q, Ding S-L, Li Y, et al.; ‘The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas.’; Cell; May 2020; 181(4):936-953.e20. [doi: 10.1016/j.cell.2020.04.007](https://doi.org/10.1016/j.cell.2020.04.007)

isAlternativeVersionOf:
isNewVersionOf:

Allen Mouse Brain CCF (version v2)

nativeUnit:

micrometer

releaseDate:

2015-05-01

shortName:

Allen Mouse Brain CCF

versionIdentifier:

v3-RAS

versionInnovation:

The third version of the ‘Allen Mouse Brain Common Coordinate Framework’ (CCFv3-RAS) is a 3D reconstruction of a whole brain at 10µm resolution. This alternative CCFv3 version was transformed to RAS axes orientation.

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version v3

@id:

https://openminds.ebrains.eu/instances/commonCoordinateSpaceVersion/AMB-CCF_v3

@type:

https://openminds.ebrains.eu/sands/CommonCoordinateSpaceVersion

abbreviation:

AMB CCF

accessibility:

free access

anatomicalAxesOrientation:

PIR

fullName:

Allen Mouse Brain Common Coordinate Framework

homepage:

https://portal.brain-map.org/

howToCite:

Wang Q, Ding S-L, Li Y, et al.; ‘The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas.’; Cell; May 2020; 181(4):936-953.e20. [doi: 10.1016/j.cell.2020.04.007](https://doi.org/10.1016/j.cell.2020.04.007)

isAlternativeVersionOf:
isNewVersionOf:

Allen Mouse Brain CCF (version v2)

nativeUnit:

micrometer

releaseDate:

2015-05-01

shortName:

Allen Mouse Brain CCF

versionIdentifier:

v3

versionInnovation:

The third version of the ‘Allen Mouse Brain Common Coordinate Framework’ (CCFv3) is a 3D reconstruction of a whole brain at 10µm resolution.

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version v2

@id:

https://openminds.ebrains.eu/instances/commonCoordinateSpaceVersion/AMB-CCF_v2

@type:

https://openminds.ebrains.eu/sands/CommonCoordinateSpaceVersion

abbreviation:

AMB CCF

accessibility:

free access

anatomicalAxesOrientation:

PIR

fullName:

Allen Mouse Brain Common Coordinate Framework

homepage:

https://portal.brain-map.org/

howToCite:

Oh S, Harris J, Ng L, et al.; ‘A mesoscale connectome of the mouse brain.’; Nature; Apr 2014; 508(7495):207–214. [doi: 10.1038/nature13186](https://doi.org/10.1038/nature13186)

isNewVersionOf:

Allen Mouse Brain CCF (version v1)

nativeUnit:

micrometer

shortName:

Allen Mouse Brain CCF

versionIdentifier:

v2

versionInnovation:

The second version of the ‘Allen Mouse Brain Common Coordinate Framework’ (CCFv2) is a 3D reconstruction of a whole brain at 100µm resolution.

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version v1

@id:

https://openminds.ebrains.eu/instances/commonCoordinateSpaceVersion/AMB-CCF_v1

@type:

https://openminds.ebrains.eu/sands/CommonCoordinateSpaceVersion

abbreviation:

AMB CCF

accessibility:

free access

anatomicalAxesOrientation:

PIR

fullName:

Allen Mouse Brain Common Coordinate Framework

homepage:

https://portal.brain-map.org/

howToCite:

Lein E, Hawrylycz M, Ao N, et al.; ‘Genome-wide atlas of gene expression in the adult mouse brain.’; Nature; Jan 2007; 445(7124):168–176. [doi: 10.1038/nature05453](https://doi.org/10.1038/nature05453)

nativeUnit:

micrometer

shortName:

Allen Mouse Brain CCF

versionIdentifier:

v1

versionInnovation:

The first version of the ‘Allen Mouse Brain Common Coordinate Framework’ (CCFv1) is a 3D reconstruction of one brain hemisphere at 200µm resolution.

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